PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032889m
Common NameCICLE_v10032889mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 179aa    MW: 19369.1 Da    PI: 8.7156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032889mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00154567123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  Ciclev10032889m 45 FECKTCNRQFPSFQALGGHRASH 67
                     89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-843113No hitNo description
PfamPF139125.5E-134469IPR007087Zinc finger, C2H2
SMARTSM003550.164567IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8064572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139124.2E-1090115IPR007087Zinc finger, C2H2
SMARTSM003550.5891113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.41191124IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRAFQESSE LDHSLNMANC LMFLSHGRGF NAVNGVNTMA AGRAFECKTC NRQFPSFQAL  60
GGHRASHKKP RFTDGNGGVD MQQLPIKPKT HECSVCGLEF AIGQALGGHM RRHRAAGLHG  120
NEKLSDLSGL SDKAPLVKKA NSRGGLCLDL NLTPYENDLE TFRLGNKVDS LVNLELCA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2796930.0KF279693.1 Citrus trifoliata trifoliate orange Cys2/His2-type zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436056.11e-130hypothetical protein CICLE_v10032889mg
RefseqXP_006486057.11e-130PREDICTED: zinc finger protein ZAT11
TrEMBLA0A067FK131e-130A0A067FK13_CITSI; Uncharacterized protein
TrEMBLV4THU81e-130V4THU8_9R
STRINGPOPTR_0010s21650.13e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-35C2H2 family protein